Fatemeh Sharifi, and Yuzhen Ye. MyDGR: a server for identification and characterization of diversity-generating retroelements, Nucleic Acids Research, 2019. (Link)

Fatemeh Sharifi, and Yuzhen Ye. From gene annotation to function prediction for metagenomics. Protein Function Prediction. Humana Press, New York, NY, 2017. ( Link)

Samad Jahandideh,Fatemeh Sharifi, Lukasz Jaroszewski, and Adam Godzik. PROPER: Performance visualization for optimizing and comparing ranking classifiers in MATLAB. Source code for biology and medicine, 2015. ( Link)

Soheila Shokrollahzade, Fatemeh Sharifi, Akbar Vaseghi, Maryam Faridounnia, and Samad Jahandideh. Protein cold adaptation: Role of physico-chemical parameters in adaptation of proteins to low temperatures. Journal of theoretical biology, 2015. ( Link)